Supplementary Materials

  1. Source code
  2. Informations, DCA results and optimized models of the 4 test sets:

The informations include sequences, secondary structures, multiple sequences alignments and native 3-D structures of all RNAs.

The files of Direct Interactions of all RNAs contain the suffixes of ".di". The names of the optimized structures without restraints contain the suffixes of "opt.nrs.pdb", while the names of the optimized structures with restraints contain the suffixes of "opt.rs.pdb".

Results Validation

Predict with no optimization

Predict with optimization (no restraints)

Predict with optimization (restraints)

Optimize (no restraints)

Optimize (restraints)

Cancel

Prompt: Click on the PDB ID of the RNA, and then select a validation type from the pop-up box.