3dRNA-2.0

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Initial Structure:

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Examples:

Example 1
Example 2
Example 3

2D Structure:

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Energy minimization:

Links of secondary structure prediction method.
Link of direct coupling analysis.
Get help from the the step-by-step guide or the documentation of 3dRNA

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The prediction result (blue) is superimposed on its respective experimental structure (gold).

References

Zhao, Y., et al., Automated and fast building of three-dimensional RNA structures. Scientific Reports, 2012. 2: p. 734.
Wang, J., et al., Optimization of RNA 3D structure prediction using evolutionary restraints of nucleotide-nucleotide interactions from direct coupling analysis. Nucleic Acids Res. 2017. doi:10.1093/nar/gkx386
Wang, J., et al., 3dRNAscore: a distance and torsion angle dependent evaluation function of 3D RNA structures. Nucleic Acids Res, 2015. 43(10): p. e63.