3dRNA-2.0

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Warning: The assembly and sampling procedure will ignore the pseudoknot information.
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Task type:

Email (optional):

Initial Structure:

Sequence:

Examples:

Example 1
Example 2
Example 3

2D Structure:

Calculate secondary structure from initial structure

Number of Samplings:

I have more restraints other than secondary structure

Restraints (optional):

Restraints Type

Advanced Settings

Loop Building Method:

Don't use templates of:

Energy minimization:

Compute 3dRNAscore

Links of secondary structure prediction method.
Link of direct coupling analysis.
Get help from the the step-by-step guide or the documentation of 3dRNA

Submitted Tasks

Query Task

The prediction result (blue) is superimposed on its respective experimental structure (gold).

References

Zhao, Y., et al., Automated and fast building of three-dimensional RNA structures. Scientific Reports, 2012. 2: p. 734.
Wang, J., et al., Optimization of RNA 3D structure prediction using evolutionary restraints of nucleotide-nucleotide interactions from direct coupling analysis. Nucleic Acids Res. 2017. doi:10.1093/nar/gkx386
Wang, J., et al., 3dRNAscore: a distance and torsion angle dependent evaluation function of 3D RNA structures. Nucleic Acids Res, 2015. 43(10): p. e63.